Bibliografía básica

Bibliografía complementaria

Bibliografía básica:

· Cerdán Villanueva, M. E. (2005). Curso avanzado de proteínas y ácidos nucleicos. Universidade da Coruña.

· Gómez-Moreno, C. & Sancho, J. (Coords). (2003). ESTRUCTURA DE PROTEÍNAS. Ariel Ciencia, Barcelona.

· Rodes, G. (2000). Crystallography. Made Crystal Clear. Academic Press.

Bibliografía complementaria:

§ Banaszak, L. J. (2000). Foundations of structural biology. Academic Press.

§ Berg, J. M., Tymoczko, J. L., Stryer. L. (2003). BIOQUÍMICA. 5ª Edición. Reverté.

§ Branden, C. & Tooze, J. (1998). INTRODUCTION TO PROTEIN STRUCTURE. 2nd edition Garland Publishing, Inc, New York

§ Carter, Jr., C.V. y Sweet, R. M. (1997). Macromolecular Crystallography, parts A and B. Methods in Enzymology, vols. 276 y 277. Academic Press. NY.

§ Casari, G., Sander, C., Valencia, A. (1995). A method to predict functional residues in proteins. Nature Struct. Biol., 2: 171178.

§ Clore, G. M. y Gonenborg, A. M. (1998). New methods of structure refinement for macromolecular structure determination by NMR. Proc. Natl. Acad. Sci., 95, 58915898.

§ Creighton, T. E. (1993). PROTEINS: STRUCTURES AND MOLECULAR PROPERTIES, 2nd edition. W.H. Freeman & Company, New York

§ Del Sol Mesa, A., Pazos, F., Valencia, A. (2003). Automatic methods for predicting functionally important residues. J. Mol. Biol., 326: 12891302.

§ Ducruix, A., Giegé, R. (1999). Crystallisation of Nucleic Acids and Proteins. A Practical Approach, edn 2. OxfordUniversity Press. Oxford.

§ Eyrich, V. A., MartiRenom, M. A., Przybylski, D., Madhusudhan, M.S., Fiser, A., Pazos, F., Valencia, A., Sali, A. y Rost, B. (2001). EVA: continuos automatic evaluation of protein structure prediction servers. Bioinformatics, 17: 12421243.

§ Ferentz, A.E. y Wagner, G. (2000). NMR spectroscopy: a multifaceted approach to macromolecular structure. Quarter Rev. Biophys. 33, 2965.

§ Fersht, A. R. (1999). Structure and Mechanism in Protein Science, Freeman and Co., NY.

§ Frank, J. (1996). Three dimensional electron microscopy of macromolecular assemblies. Academic Press, San Diego.

§ Harris, E. L. V. y Angel, S. (eds.) (1999): Protein purification methods. A practical approach. IRL Press. Oxford.

§ James, T. L., Dötsch, V. y Smith, U. (2001). Nuclear Magnetic Resonante of Biological Macromolecules. Part A and B. Methods Enzymol., 338, Academic Press, San Diego.

§ Juan, D., Graña, O., Pazos, F., Fariselli, P., Casadio, R., Valencia, A. (2003). A neural network approach to evaluate Fold recognition results. Proteins Mar 1,(4): 50, 600608.

§ Kleanthous, C. (ed.) (2000). ProteinProtein Recognition. OxfordUniversity Press, Oxford.

§ Lesk, A. M. (2000). INTRODUCTION TO PROTEIN ARCHITECTURE. THE STRUCTURAL BIOLOGY OF PROTEINS. OxfordUniversity Press, Oxford.

§ Mayo, K. H. y Daragan, U. A. (2003). Protein dynamics using NMR relaxation. World Scientific, Nueva Jersey.

§ McEwen, B. F. y Marcko, M. (2001). The emergente of electrón tomography as an important tool for investigating cellular ultrastructure. J. Histochem. Cytochem. Vol 49, 553563.

§ Mc Pherson, A. (2002). Introduction to Macromolecular Crystallography. John Wiley and Sons. Inc., NY.

§ Naomi, E. C. (2004). Turning Protein crystallisation from an art into a science. Current Opinion in Structural Biology, 14: 577583.

§ Nelson, D. L., Cox, M. M. (2000). LEHNINGER PRINCIPLES OF BIOCHEMISTRY. Worth Publishers.

§ Sinha, N. y SmithGill, S. J. (2002). Protein structure to function via dynamics. Protein Peptid Letters, 9: 367377.

§ Van Heel, M. (2000). Single particle electrón cryomicroscopy: towards atomic resolution. Q. Rev. Byophis. Vol. 33, 307369.

§ Igor Stagljar and Stanley Fields (2002). Analysis of membrane protein interactions using yeast-based technologies • REVIEW . Trends in Biochemical Sciences, 27: 559-563.

§ Sandor Vajda and Carlos J. Camacho (2004). Protein–protein docking: is the glass half-full or half-empty? Trends in Biotechnology, 22: 110-116.

§ Dobrin Nedelkov and Randall W. Nelson (2003). Surface plasmon resonance mass spectrometry: recent progress and outlooks • REVIEW Trends in Biotechnology, 21: 301-305.

§ Takashi Ito, Tomoko Chiba and Mikio Yoshida (2001). Exploring the protein interactome using comprehensive two-hybrid projects • REVIEW . Trends in Biotechnology, 19 (Supplement 1): 23-27.

§ Valerio Orlando (2000). Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation • REVIEW . Trends in Biochemical Sciences, 25: 99-104.

§ Dobrin Nedelkov and Randall W. Nelson (2003) Surface plasmon resonance mass spectrometry: recent progress and outlooks • REVIEW . Trends in Biotechnology, 21: 301-305.

§ PhilippeI. H. Bastiaens and Rainer Pepperkok (2000). Observing proteins in their natural habitat: the living cell • REVIEW . Trends in Biochemical Sciences, 25: 631-637

Outros materiais de apoio:

· Publicaciones periódicas con acceso electrónico desde la UDC: Trends in Biotechnology, Current Opinion in Biotechnology, Nature Biotechnology, Biotechnology Advances, Journal of Biotechnology, Biotechnology and Bioengineering, Enzyme and Microbial Technology, Biochemical Engineering Journal, Biotechnology Letters, Biotechnology Progress,Bioresource Technology, Process Biochemistry, etc....

· Bases de datos como Medline, páginas con links a recursos bioinformáticos como Expasy, etc

· Materiales disponibles en la página web de la asignatura

Recursos web:

Coordenadas:

Protein Data Bank: http://www.rcsb.org/pdb

BioMagResBank: http://www.brmb.wisc.edu

Cambridge Crystall Data Centre: http://www.ccdc.cam.ac.uk

Molecular Modelling DataBase: http://www.ncbi.nlm.nih.gov/structure

Nucleic Acid Database: http://ndbserver.rutgers.edu:80/

MOOSE: http://db2.sdsc.edu/moose

Molecules To Go ('R US): http://molbio.info.nih.gov/cgi-bin/pdb

Enzyme Structures Database: http://www.ebi.ac.uk/thornton-srv/databases/enzymes

Clasificación estructural

CATH http://www.biochem.ucl.ac.uk/bsm/cath

SCOP http://scop.mrc-lmb.cam.ac.uk/scop

FSSP http://www2.embl-ebi.ac.uk/dali/fssp

Programas de visualización molecular:

Rasmol: http://www.umass.edu/microbio/rasmol

Swiss-PdbViewer: http://www.expasy.ch/spdbv/

MOLMOL http://www.mol.biol.ethz.ch/wuthrich/software/molmol

Cn3D http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml

Chime http://www.umass.edu/microbio/chime

Servidores de alineamientos de secuencias:

BLAST http://www.ncbi.nlm.nih.gov/BLAST

FASTA http://www.ebi.ac.uk/fasta33

Servidores de predicción y modelización:

SWISS-MODEL http://expasy.ch/swissmod/

The PredictProtein Server http://ww.embl-heidelberg.de/predictprotein/predictprotein.html

Center for Molecular Modeling: http://cmm.info.nih.gov/modeling/

GRAMM: http://reco3.musc.edu/gramm/

PQS (Probable Quat. Structure): http://msd.ebi.ac.uk/services/quaternary/quaternary.html