Mestrado Universitario en Bioloxía Molecular , Celular e Xenética
Descriptors
Cycle
Period
Year
Type
Credits
Official Master's Degree
2nd four-month period
First
Optativa
3
Language
Spanish
Galician
English
Prerequisites
Department
Bioloxía Celular e Molecular
Coordinador
Becerra Fernandez, Manuel
E-mail
manuel.becerra@udc.es
Lecturers
Becerra Fernandez, Manuel
Vila Taboada, Marta
E-mail
manuel.becerra@udc.es
marta.vila.taboada@udc.es
Web
General description
Denomínase xenómica ao estudo integral do funcionamento, evolución e orixe dos xenomas. A xenómica utiliza coñemenetos derivados de distintas disciplinas como xenética, bioloxía molecular, bioquímica, informática, estatística, matemáticas e física.
A diferenza da xenética clásica que a partires dun fenotipo (xeralmente mutante) procura o xene ou xenes responsables dese fenotipo, a xenómica ten como obxectivo predicir a función dos xenes a partir da súa secuencia ou das súas interaccións con outros xenes.
As denominadas "ciencias ómicas" están na vangarda da ciencia, feito debido ás posibilidades abertas polas novas tecnoloxías de secuenciación masiva, aos avances en bioinformática e aos algoritmos cada vez máis sofisticados para análise de xenomas completos.
Study programme competencies
Code
Study programme competences
A3
Skills of using usual techniques and instruments in the cellular, biological and molecular research: that are able to use techniques and instruments as well as understanding potentials of their uses and applications.
A5
Skills of understanding the functioning of cells through the structural organization, biochemistry, gene expression and genetic variability.
A15
Skills of using Biocomputer science tools at the level of user.
B1
Analysis skills to understand biological problems in connection with the Molecular and Cellular Biology and Genetics.
B2
Skills of management of the information: that are able to gather and to understand relevant information and results, obtaining conclusions and to prepare reasoned reports on scientific and biotechnological questions.
B3
Skills of decision making for the problem solving: that are able to apply theoretical knowledges and practical acquired in the formulation of biological problems and the looking for solutions.
B5
Correct oral and written communication on scientific topics in the native language and at least in another International diffusion language.
B9
Skills of preparation, show and defense of a work.
C2
Skills of dominating the oral form expression and compression and written of a foreign language.
C3
Skills of Using basic tools of the information technologies and communications (ICT) necessary to the exercise of his profession and for the apprenticeship over his life.
C8
Considering the importance that the investigation has, the innovation and the technological development in the socioeconomic advance and cultural of the society.
Learning aims
Subject competencies (Learning outcomes)
Study programme competences
To learn the basics of the different molecular techniques used in genomics, with particular emphasis in NGS
AR1 AR11
BR1 BR5
CC2 CC3
To acquire an updated view about the current scope and future perspectives of structural, functional and evolutionary genomics
AR1 AR11
BR1 BR5 BR9
CC2 CC3 CC8
To understand how genomes evolve and how molecular and bioinformatic tools are used for that purpose
AR1 AR3 AR11
BR1 BR5 BR9
CC2
DNA microarrays: experimental set up and data analysis.
AR1 AR3 AR11
BR1 BR2 BR3
CC3
Contents
Topic
Sub-topic
Genome organisation:
Structure of prokaryote and eukaryote genomes. Genome size and C-value. Gene families. Repetitive DNA. Genomes of model organisms. Organelle genomes. Evolutionary Genomics.
Techniques:
Sequencing strategies and methodologies. Linkage and phyical mapping. Assembly and annotation. ADN microarrays: methodology, types of platforms, experimental set up, data analysis.
Bioinformatics:
Genomic databases. Large-scale genomic projects. Gene expression analysis and microarrays. Software for cluster and correspondence analyses.
Planning
Methodologies / tests
Ordinary class hours
Student’s personal work hours
Total hours
Guest lecture / keynote speech
10
18.62
28.62
Oral presentation
5
3
8
Events academic / information
1
3
4
ICT practicals
10
20
30
Objective test
2
0
2
Personalized attention
2.38
0
2.38
(*)The information in the planning table is for guidance only and does not take into account the heterogeneity of the students.
Methodologies
Methodologies
Description
Guest lecture / keynote speech
Active lecturing.
Oral presentation
Each student will have to summarize in up to 15 minutes the content of a review paper. Readings assignments will be made available three weeks in advance via MOODLE.
Events academic / information
During the term, a seminar speaker, with expertise in Genomics, is invited as a guest lecturer. Students are required to attend this seminar and read the paper assigned (via MOODLE) for this activity.
ICT practicals
OUr 10-hour, computer lab curriculum was developed to accompany the lecture course in Genomics. The students work on their own web-based investigations and present their results to each other (active learnning).
Objective test
Written exam.
Personalized attention
Methodologies
Oral presentation
ICT practicals
Description
instructors will typically be available via email. Students can arrange for in-person tutoring sessions.
Assessment
Methodologies
Description
Qualification
Guest lecture / keynote speech
Attendance and active learning.
Evaluation of this activity aims at checking the acquisition of the following competencies: A1, A11, B1, C2 and C8.
10
Oral presentation
Summarising and communication skills.
Evaluation of this activity aims at checking the acquisition of the following competencies: A1, A11, B1, B5, B9, C2 and C8.
20
ICT practicals
Attendance and active learning.
A brief written assignment will be required: summarising and writting skills will be assessed.
Evaluation of this activity aims at checking the acquisition of the following competencies: A1, A3, A11, B1, B2, B3, B5, C2, C3 and C8.
20
Objective test
The exam will evaluate items discussed in the aforementioned activities, as well as the acquisition of the following competencies: A1, A11, B1 and B3.
40
Events academic / information
Attendance and participation in the final discussion.
Evaluation of this activity aims at checking the acquisition of the following competencies: A1, A11, B1, B5, C2 and C8.
10
Assessment comments
Mark "A with distinction" will only be awarded to outstanding students passing the subject in June.
Sources of information
Basic
McLachlan, G. J., Do, K-A., Ambroise, C (2004). Analyzing Microarray Gene Expression Data. Wiley-Interscience. John Wiley & Sons
Bowtell, D., Sambrook, J. (2003). DNA Microarrays. Cold Spring Harbor Laboratory Press.
Allison, David B., et al (2006). DNA microarrays and related genomics techniques design, analysis, and interpretation of experiments. Chapman & Hall/CRC
E. Rinaldis, A. Lahm. (2007). DNA microarrays: current applications. Wymondham: Horizon Bioscience
Mushegian, Arcady R. (2007). Foundations of comparative genomics. Academic Press
Hunt. S. P., Livesey, R. (2001). Functional genomics. A practical approach. Oxford University Press
Brown, Terry A. (2008). Genomas. Médica Panamericana
Sussman, Hillary E. y Smit, María (2006). Genomes. Cold Spring Harbor Laboratory Press
Meyers, Robert A. (2007). Genomics and genetics : from molecular details to analysis and techniques. Wiley-VCH
Gregory, T. Ryan (2005). The evolution of the genome. Elsevier Academic Press
Lynch, Michael (2007). The origins of genome architecture. Sinauer Associates
Complementary
Straalen, Nico M. van (2006). An introduction to ecological genomics. Oxford University Press
Zhanjiang, Liu (2007). Aquaculture genome techonologies. Blackwell
Futuyama, Douglas J. (2006). Evolution. Sinauer Associates
Dale Jeremy (2008). From genes to genomes: concepst and applications of DNA technology. John Wiley & Sons
Sensen, Christoph W. (2005). Handbook of genome research genomics, proteomics, metabolism, bioinformatics, ethical & legal issues . Wiley-VCH
RECURSOS EN INTERNET:
Biological database compilation at NAR: http://nar.oupjournals.org/content/vol29/issue1
DOE Joint Genome Institut. Why sequence them? http://www.jgi.doe.gov/sequencing/why/index.html
Subjects that it is recommended to have taken before
Traballo de Máster/610441022
Subjects that are recommended to be taken simultaneously
Proteómica/610441013
Cromosomas: Estructura. Función e Evolución/610441015
Xenética Humana/610441016
Toxicología Xenética/610441017
Subjects that continue the syllabus
Técnicas Celulares/610441001
Técnicas Moleculares/610441002
Mecanismos de xeración da variación xenética/610441005
Regulación da expresión xénica/610441006
Bioinformática e Modelado de Biomoléculas/610441020
Other comments
(*)The teaching guide is the document in which the URV publishes the information about all its courses. It is a public document and cannot be modified. Only in exceptional cases can it be revised by the competent agent or duly revised so that it is in line with current legislation.