Teaching GuideTerm
Faculty of Computer Science
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Mestrado Universitario en Bioinformática para Ciencias da Saúde
 Subjects
  High performance computing in bioinformatics
   Contents
Topic Sub-topic
1) Introduction to parallel programming 1.1) Basic concepts of parallel computing
1.2) Parallel computer architectures
1.3) Parallel programming paradigms
1.4) Performance evaluation of parallel algorithms
2) Parallel programming on shared memory architectures 2.1) Shared memory architectures
2.2) Shared memory programming model
2.3) Programming languages for shared memory architectures
3) Parallel programming on distributed memory architectures 3.1) Distributed memory architectures
3.2) Message-passing programming model
3.3) Programming languages for distributed memory architectures
4) Parallel programming on emerging architectures 4.1) GPUs
4.2) Programming languages for GPUs
4.3) Intel Xeon Phi
5) Executing parallel bioinformatics tools 5.1) Analysis of parallel bioinformatics tools
5.2) Execution on shared memory systems
5.3) Execution on distributed memory systems
5.4) Execution on GPUs
5.5) Usage of execution queues on supercomputers centers
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